Pharmacogenomic landscape of patient-derived tumor cells informs precision oncology therapy
…, JW Oh, M Song, M Kim, DS Kong, JW Choi, HJ Seol… - Nature …, 2018 - nature.com
Outcomes of anticancer therapy vary dramatically among patients due to diverse genetic
and molecular backgrounds, highlighting extensive intertumoral heterogeneity. The …
and molecular backgrounds, highlighting extensive intertumoral heterogeneity. The …
[HTML][HTML] Identification of copy number variations and common deletion polymorphisms in cattle
JS Bae, HS Cheong, LH Kim, S NamGung, TJ Park… - BMC genomics, 2010 - Springer
Background Recently, the discovery of copy number variation (CNV) led researchers to think
that there are more variations of genomic DNA than initially believed. Moreover, a certain …
that there are more variations of genomic DNA than initially believed. Moreover, a certain …
[HTML][HTML] Prevalence and detection of low-allele-fraction variants in clinical cancer samples
Accurate detection of genomic alterations using high-throughput sequencing is an essential
component of precision cancer medicine. We characterize the variant allele fractions (VAFs) …
component of precision cancer medicine. We characterize the variant allele fractions (VAFs) …
CNVRuler: a copy number variation-based case–control association analysis tool
The method for genome-wide association study (GWAS) based on copy number variation (CNV)
is not as well established as that for single nucleotide polymorphism (SNP)–GWAS. …
is not as well established as that for single nucleotide polymorphism (SNP)–GWAS. …
RNA-seq reveals transcriptomic differences in inflamed and noninflamed intestinal mucosa of Crohn's disease patients compared with normal mucosa of healthy …
SN Hong, JG Joung, JS Bae, CS Lee… - Inflammatory bowel …, 2017 - academic.oup.com
Background Aberrant gene expression in the gut mucosa might contribute to the initiation
and progression of Crohn's disease (CD). RNA sequencing (RNA-seq) provides precise …
and progression of Crohn's disease (CD). RNA sequencing (RNA-seq) provides precise …
Tumor heterogeneity predicts metastatic potential in colorectal cancer
…, H Al-Khalidi, F Al-Alem, HO Lee, JS Bae… - Clinical Cancer …, 2017 - AACR
Purpose: Tumors continuously evolve to maintain growth; secondary mutations facilitate this
process, resulting in high tumor heterogeneity. In this study, we compared mutations in …
process, resulting in high tumor heterogeneity. In this study, we compared mutations in …
[HTML][HTML] A single nucleotide polymorphism in CAPN1 associated with marbling score in Korean cattle
HS Cheong, DH Yoon, BL Park, LH Kim, JS Bae… - BMC genetics, 2008 - Springer
Background Marbling score (MS) is the major quantitative trait that affects carcass quality in
beef cattle. In this study, we examined the association between genetic polymorphisms of the …
beef cattle. In this study, we examined the association between genetic polymorphisms of the …
Genome-wide association study of aspirin-exacerbated respiratory disease in a Korean population
BL Park, TH Kim, JH Kim, JS Bae, CFA Pasaje… - Human genetics, 2013 - Springer
Aspirin-exacerbated respiratory disease (AERD) is a nonallergic clinical syndrome characterized
by a severe decline in forced expiratory volume in one second (FEV1) following the …
by a severe decline in forced expiratory volume in one second (FEV1) following the …
[HTML][HTML] Intratumor heterogeneity inferred from targeted deep sequencing as a prognostic indicator
Tumor genetic heterogeneity may underlie poor clinical outcomes because diverse subclones
could be comprised of metastatic and drug resistant cells. Targeted deep sequencing has …
could be comprised of metastatic and drug resistant cells. Targeted deep sequencing has …
[HTML][HTML] Genome-Wide and Follow-Up Studies Identify CEP68 Gene Variants Associated with Risk of Aspirin-Intolerant Asthma
JH Kim, BL Park, HS Cheong, JS Bae, JS Park… - PloS one, 2010 - journals.plos.org
Aspirin-intolerant asthma (AIA) is a rare condition that is characterized by the development
of bronchoconstriction in asthmatic patients after ingestion of non-steroidal anti-inflammatory …
of bronchoconstriction in asthmatic patients after ingestion of non-steroidal anti-inflammatory …