Cell plasticity and heterogeneity in cancer
ND Marjanovic, RA Weinberg, CL Chaffer - Clinical chemistry, 2013 - academic.oup.com
BACKGROUND Heterogeneity within a given cancer arises from diverse cell types recruited
to the tumor and from genetic and/or epigenetic differences amongst the cancer cells …
to the tumor and from genetic and/or epigenetic differences amongst the cancer cells …
[HTML][HTML] High-flow nasal oxygen therapy and noninvasive ventilation in the management of acute hypoxemic respiratory failure
JP Frat, R Coudroy, N Marjanovic… - Annals of translational …, 2017 - ncbi.nlm.nih.gov
High-flow nasal cannula (HFNC) oxygen therapy is a recent technique delivering a high
flow of heated and humidified gas. HFNC is simpler to use and apply than noninvasive …
flow of heated and humidified gas. HFNC is simpler to use and apply than noninvasive …
[PDF][PDF] Perturb-Seq: dissecting molecular circuits with scalable single-cell RNA profiling of pooled genetic screens
Genetic screens help infer gene function in mammalian cells, but it has remained difficult to
assay complex phenotypes—such as transcriptional profiles—at scale. Here, we develop …
assay complex phenotypes—such as transcriptional profiles—at scale. Here, we develop …
Systematic comparison of single-cell and single-nucleus RNA-sequencing methods
…, MS Kowalczyk, CC Hession, ND Marjanovic… - Nature …, 2020 - nature.com
… Assuming that there were N m marker genes for cell type m, we considered these N m genes
combined as a ‘meta-gene’ with counts \(f_i^m = \mathop {\sum}\limits_j^{N_m} {x_{i,j}}\) in …
combined as a ‘meta-gene’ with counts \(f_i^m = \mathop {\sum}\limits_j^{N_m} {x_{i,j}}\) in …
[HTML][HTML] Poised chromatin at the ZEB1 promoter enables breast cancer cell plasticity and enhances tumorigenicity
… Quantification of differential ZEB1 expression in basal cell lines (n = 4). … The functional
state of chromatin has been defined largely by patterns of covalent modifications to the N-terminal …
state of chromatin has been defined largely by patterns of covalent modifications to the N-terminal …
Asymmetric apportioning of aged mitochondria between daughter cells is required for stemness
…, J Döhla, CL Chaffer, N Pentinmikko, N Marjanovic… - Science, 2015 - science.org
By dividing asymmetrically, stem cells can generate two daughter cells with distinct fates.
However, evidence is limited in mammalian systems for the selective apportioning of …
However, evidence is limited in mammalian systems for the selective apportioning of …
[PDF][PDF] Emergence of a high-plasticity cell state during lung cancer evolution
ND Marjanovic, M Hofree, JE Chan, D Canner, K Wu… - Cancer cell, 2020 - cell.com
Tumor evolution from a single cell into a malignant, heterogeneous tissue remains poorly
understood. Here, we profile single-cell transcriptomes of genetically engineered mouse lung …
understood. Here, we profile single-cell transcriptomes of genetically engineered mouse lung …
Induction and transcriptional regulation of the co-inhibitory gene module in T cells
The expression of co-inhibitory receptors, such as CTLA-4 and PD-1, on effector T cells is a
key mechanism for ensuring immune homeostasis. Dysregulated expression of co-inhibitory …
key mechanism for ensuring immune homeostasis. Dysregulated expression of co-inhibitory …
[HTML][HTML] A distinct gene module for dysfunction uncoupled from activation in tumor-infiltrating T cells
Reversing the dysfunctional T cell state that arises in cancer and chronic viral infections is
the focus of therapeutic interventions; however, current therapies are effective in only some …
the focus of therapeutic interventions; however, current therapies are effective in only some …
[PDF][PDF] Anatomically and functionally distinct lung mesenchymal populations marked by Lgr5 and Lgr6
The diversity of mesenchymal cell types in the lung that influence epithelial homeostasis
and regeneration is poorly defined. We used genetic lineage tracing, single-cell RNA …
and regeneration is poorly defined. We used genetic lineage tracing, single-cell RNA …